Biomolecular motors are tiny protein machines that convert chemical energy into mechanical work, powering various cellular processes. These nanoscale marvels come in two main types: linear motors that move along tracks, and rotary motors that spin around an axis.
Linear motors like myosin, , and transport cargo and generate forces by "walking" along filaments. Rotary motors like flagellar motors and ATP synthase produce spinning motions. Both types use to drive conformational changes that enable their mechanical functions.
Types of biomolecular motors
Biomolecular motors are protein machines that convert chemical energy into mechanical work, enabling various cellular processes such as transport, motility, and
These motors can be classified based on their structural and functional properties, with the main categories being linear motors and rotary motors
Linear vs rotary motors
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Linear motors (myosin, kinesin, dynein) move along filamentous tracks ( or ) in a straight line, typically transporting cargo or generating contractile forces
Rotary motors (flagellar motors, ATP synthase) generate rotational motion around an axis, often involved in propulsion or energy production
Linear motors undergo conformational changes that result in a stepping motion, while rotary motors exhibit continuous rotation driven by proton gradients or ATP hydrolysis
Myosin motors
Myosin motors interact with actin filaments and are best known for their role in muscle contraction (skeletal, cardiac, and smooth muscle)
Myosin II, the conventional myosin found in muscle cells, forms thick filaments that slide along actin thin filaments, generating contractile forces
Non-muscle myosins (I, V, VI) are involved in various cellular processes such as cell migration, endocytosis, and organelle transport
Kinesin motors
Kinesin motors transport cargo (organelles, vesicles, protein complexes) along microtubules, typically in the anterograde direction (from the cell body to the periphery)
Kinesin-1, the conventional kinesin, has two motor domains that alternate in a hand-over-hand motion, allowing processive movement
Other kinesin families (kinesin-2, kinesin-13) have specialized functions such as intraflagellar transport or microtubule depolymerization
Dynein motors
Dynein motors, particularly cytoplasmic dynein, transport cargo along microtubules in the retrograde direction (from the periphery to the cell body)
Axonemal dyneins are responsible for the beating motion of cilia and flagella, enabling cell motility or fluid flow
Dynein motors have a complex structure with multiple subunits and accessory proteins that regulate their activity and cargo binding
Flagellar motors
Bacterial flagellar motors are rotary motors that drive the rotation of flagella, enabling bacterial motility and chemotaxis
The motor consists of a rotor (MS ring) and a stator (MotA/MotB complexes) that generate torque through proton or sodium ion flux
Flagellar motors can switch between counterclockwise and clockwise rotation, leading to running or tumbling behavior in bacteria
Structure of biomolecular motors
Biomolecular motors have a modular structure with distinct domains that enable their function and regulation
The structural organization of these motors is adapted to their specific roles and the filaments they interact with
Motor domains
The motor domain is the catalytic core of the motor protein, responsible for ATP hydrolysis and filament binding
In linear motors (myosin, kinesin, dynein), the motor domain undergoes conformational changes that generate force and movement
The motor domain of rotary motors (flagellar motors) is part of the rotor and interacts with the stator to generate torque
Neck regions
The neck region connects the motor domain to the tail domain and plays a crucial role in the mechanical properties of the motor
In myosin motors, the neck region consists of a long α-helical lever arm that amplifies the small conformational changes in the motor domain
Kinesin and dynein motors have shorter neck linkers that transmit the conformational changes to the tail domain
Tail domains
The tail domain is responsible for cargo binding, dimerization, and regulation of motor activity
Myosin tails form coiled-coil dimers and can self-assemble into thick filaments (myosin II) or bind to cargo adaptors (non-muscle myosins)
Kinesin tails often contain light chain binding sites and can interact with various cargo adaptors or regulatory proteins
Dynein tails are associated with multiple subunits and accessory proteins that modulate their activity and cargo specificity
Structural adaptations for function
The structural features of biomolecular motors are tailored to their specific functions and the filaments they interact with
Myosin motors have a prominent lever arm that enables large step sizes (5-10 nm) and force generation, suitable for muscle contraction and
Kinesin motors have a compact structure with a short neck linker, allowing efficient hand-over-hand motion and long-distance transport along microtubules
Dynein motors have a unique AAA+ ring structure in their motor domain, which enables a large power stroke and adaptability to various cellular functions
Flagellar motors have a complex ring structure (rotor) and multiple stator units that generate high torque and enable rapid rotation for bacterial swimming
Mechanisms of motion
Biomolecular motors convert the chemical energy of ATP hydrolysis into mechanical work through a series of conformational changes and filament interactions
The specific mechanisms of motion vary between different types of motors but share some common principles
ATP hydrolysis
ATP hydrolysis is the primary energy source for most biomolecular motors, providing the necessary free energy for conformational changes and motion
The motor domain contains a nucleotide-binding pocket that catalyzes the hydrolysis of ATP to ADP and inorganic phosphate (Pi)
The release of the hydrolysis products (ADP and Pi) is often coupled to the force-generating conformational changes in the motor
Conformational changes
ATP hydrolysis and product release induce conformational changes in the motor domain, which are amplified and transmitted to the neck and tail regions
In myosin motors, ATP binding causes the dissociation of the motor domain from actin, followed by a lever arm swing upon ATP hydrolysis and Pi release
Kinesin motors undergo a neck linker docking and undocking cycle, which is coupled to ATP hydrolysis and results in a hand-over-hand stepping motion
Dynein motors exhibit a power stroke mechanism, where ATP hydrolysis in the AAA+ ring leads to a large-scale conformational change and displacement of the microtubule-binding domain
Binding and release of filaments
The cyclic binding and release of the motor domains to their respective filaments (actin or microtubules) is essential for the stepping motion and force generation
Myosin motors have a high affinity for actin in the ADP-bound state and a low affinity in the ATP-bound state, allowing for the attachment-detachment cycle
Kinesin and dynein motors have a similar nucleotide-dependent affinity for microtubules, with strong binding in the ATP-bound state and weak binding in the ADP-bound state
The coordination of filament binding and release between the two motor domains enables processive movement and cargo transport
Stepping patterns
Linear motors exhibit distinct stepping patterns that reflect their mechanochemical cycles and the coordination between the motor domains
Myosin V and VI motors have a hand-over-hand stepping pattern, where the two motor domains alternate in leading and trailing positions, resulting in a large step size (36 nm for myosin V)
Kinesin-1 also follows a hand-over-hand mechanism, with a step size of 8 nm that matches the distance between adjacent tubulin dimers on the microtubule
Cytoplasmic dynein has a more complex stepping pattern, with variable step sizes and occasional backward steps, reflecting its unique AAA+ ring structure and flexibility
Processivity of motors
refers to the ability of a motor to take multiple steps along its filament track before dissociating
Highly processive motors, such as myosin V and kinesin-1, can take hundreds of steps before detaching, enabling efficient long-distance transport of cargo
Less processive motors, like muscle myosin II, take only a few steps before dissociating, which is suitable for their role in generating contractile forces
Processivity is determined by the coordination between the motor domains, the duty ratio (fraction of time spent in the strongly bound state), and the affinity for the filament track
Cellular functions
Biomolecular motors play crucial roles in various cellular processes, enabling the spatial organization and dynamics of the cell
The specific functions of motors are determined by their structural properties, regulation, and the cellular context in which they operate
Intracellular transport
Kinesin and dynein motors are the primary drivers of intracellular transport along microtubules, which serve as highways for long-distance cargo movement
Kinesins generally transport cargo (organelles, vesicles, protein complexes) in the anterograde direction (from the cell body to the periphery), while dyneins mediate retrograde transport (from the periphery to the cell body)
This bidirectional transport is essential for the proper distribution of cellular components, such as the delivery of synaptic vesicles in neurons or the trafficking of endosomes and lysosomes
Muscle contraction
Myosin II motors are the key force generators in muscle contraction, working in concert with actin filaments to produce mechanical work
In skeletal muscle, myosin thick filaments and actin thin filaments form the sarcomere, the basic contractile unit of the muscle fiber
The cyclic interaction between myosin heads and actin, driven by ATP hydrolysis, results in the sliding of the filaments and the shortening of the sarcomere, leading to muscle contraction
Cell division
Kinesin and dynein motors play essential roles in the formation and function of the mitotic spindle during cell division
Kinesin-5 motors (e.g., Eg5) generate outward forces that push the spindle poles apart, while kinesin-14 motors (e.g., HSET) provide inward forces that counterbalance the spindle
Dynein motors, in association with the dynactin complex, focus the microtubule minus ends at the spindle poles and help position the spindle through cortical anchoring
Ciliary and flagellar movement
Axonemal dyneins are responsible for the beating motion of cilia and flagella, which are essential for cell motility and fluid flow
The coordinated activity of dynein motors, attached to the microtubule doublets of the axoneme, generates the bending and oscillatory motion of these organelles
Kinesin-2 motors, such as the heterotrimeric KIF3 complex, are involved in intraflagellar transport (IFT), which is necessary for the assembly and maintenance of cilia and flagella
Bacterial motility
Bacterial flagellar motors drive the rotation of flagella, enabling bacterial swimming and chemotaxis
The motor, embedded in the cell membrane, consists of a rotor (MS ring) and a stator (MotA/MotB complexes) that generate torque through proton or sodium ion flux
The switching between counterclockwise and clockwise rotation of the motor, regulated by the chemotaxis signaling pathway, results in the alternation between running and tumbling behavior, allowing bacteria to navigate their environment
Regulation of motor activity
The activity and function of biomolecular motors are tightly regulated to ensure their proper spatial and temporal control within the cell
Various regulatory mechanisms, involving signaling pathways, post-translational modifications, and motor-associated proteins, modulate the activity, localization, and cargo binding of motors
Calcium signaling
Calcium ions (Ca2+) are universal second messengers that regulate the activity of many biomolecular motors, particularly myosin motors
In muscle cells, the binding of Ca2+ to the troponin complex triggers a conformational change that exposes the myosin-binding sites on actin, allowing for muscle contraction
Some non-muscle myosins, such as myosin V, have calmodulin light chains that bind Ca2+ and modulate the motor's activity and cargo interaction
Phosphorylation
Phosphorylation is a common post-translational modification that regulates the activity and function of biomolecular motors
Kinases and phosphatases add or remove phosphate groups from specific residues on the motor or its associated proteins, altering their conformation, interaction, or localization
For example, the phosphorylation of the myosin regulatory light chain by myosin light chain kinase (MLCK) enhances the motor activity and force production in smooth muscle and non-muscle cells
Cargo binding and release
The binding and release of cargo are regulated by various mechanisms to ensure the specificity and timing of transport
Cargo adaptor proteins, such as the dynactin complex for dynein or the kinesin light chains for kinesin-1, mediate the interaction between the motor and its cargo
Rab GTPases, which are molecular switches that cycle between GTP-bound (active) and GDP-bound (inactive) states, play a key role in the recruitment and activation of motor-cargo complexes
Motor-associated proteins
A wide range of motor-associated proteins, including scaffolding proteins, regulatory subunits, and cofactors, modulate the activity and function of biomolecular motors
Dynein activity is regulated by a complex network of associated proteins, such as dynactin, LIS1, and NudE/NudEL, which affect its processivity, force generation, and cargo interaction
Kinesin-binding protein (TRAK/Milton) and mitochondrial Rho GTPase (Miro) form a complex that links kinesin motors to mitochondria and regulates their transport in response to calcium signals
Biophysical properties
Biomolecular motors exhibit remarkable biophysical properties that enable them to perform their cellular functions efficiently
These properties, such as force generation, velocity, and efficiency, are determined by the structural and mechanochemical characteristics of the motors
Force generation
Biomolecular motors generate force through the conformational changes induced by ATP hydrolysis and filament interaction
The force generated by a single motor is typically in the piconewton (pN) range, with myosin II motors producing forces of 3-4 pN and kinesin-1 motors generating forces of 5-7 pN
The collective action of multiple motors can generate much higher forces, as observed in muscle contraction or the movement of large organelles
Velocity and speed
The velocity of biomolecular motors refers to the at which they move along their filament track
Different motors exhibit varying velocities, depending on their mechanochemical cycle and the cellular context
Kinesin-1 motors have a velocity of about 800 nm/s, while myosin V motors move at a slower pace of 200-400 nm/s, reflecting their different stepping patterns and processivity
Stall force
The stall force is the maximum force that a motor can generate before it stops moving, representing the balance between the motor's force output and the opposing load
The stall force provides insight into the force-generating capacity and the of the motor
Kinesin-1 has a stall force of about 7 pN, while muscle myosin II can generate a stall force of 3-4 pN per motor head
Duty ratio
The duty ratio is the fraction of time that a motor spends in the strongly bound state (attached to its filament) during its mechanochemical cycle
Motors with a high duty ratio (>0.5), such as myosin V and kinesin-1, are highly processive and can take multiple steps before dissociating from the filament
Low duty ratio motors, like muscle myosin II, spend more time in the weakly bound state and are less processive, suitable for their role in generating contractile forces
Thermodynamic efficiency
Biomolecular motors convert the chemical energy of ATP hydrolysis into mechanical work with remarkable efficiency
The thermodynamic efficiency of a motor is the ratio of the work performed to the free energy input from ATP hydrolysis
Kinesin-1 motors have a thermodynamic efficiency of about 50%, while muscle myosin II motors have an efficiency of 30-40%, indicating their optimized energy utilization for their respective functions
Experimental techniques
The study of biomolecular motors relies on a range of experimental techniques that enable the measurement of their biophysical properties and the observation of their behavior at the single-molecule level
These techniques have greatly advanced our understanding of motor function and regulation, providing insights into their mechanochemical mechanisms and cellular roles
Optical tweezers
use focused laser beams to trap and manipulate small dielectric particles, such as polystyrene beads, which can be attached to biomolecular motors or their filament tracks
By measuring the displacement of the trapped particle from the center of the laser focus, the force generated by the motor can be determined with high precision (in the piconewton range)
Optical tweezers have been used to study the stepping behavior, force-velocity relationships, and load-dependent properties of various motors, such as kinesin-1 and myosin V
Single-molecule fluorescence
Single-molecule fluorescence techniques, such as total internal reflection fluorescence (TIRF) microscopy, allow the visualization of individual motor proteins labeled with fluorescent dyes or genetically encoded fluorescent proteins
By tracking the movement of fluorescently labeled motors along their filament tracks, the stepping dynamics, processivity, and velocity of the motors can be measured with nanometer precision
Single-molecule fluorescence has also been used to study the coordination between motor domains, the binding and release of
Key Terms to Review (18)
Actin filaments: Actin filaments are thin, flexible protein structures made of actin monomers that form part of the cytoskeleton in eukaryotic cells. These filaments play a critical role in maintaining cell shape, enabling cell movement, and facilitating various cellular processes, such as division and intracellular transport, especially in the context of biomolecular motors.
ATP Hydrolysis: ATP hydrolysis is the chemical reaction in which adenosine triphosphate (ATP) is broken down into adenosine diphosphate (ADP) and an inorganic phosphate (Pi), releasing energy. This process is crucial for various biological functions, particularly in powering biomolecular motors, which utilize this energy to perform mechanical work and facilitate movement within cells.
Bacterial flagellar motor: The bacterial flagellar motor is a complex molecular machine that enables bacteria to swim by rotating their flagella. It consists of a motor protein complex embedded in the bacterial membrane, which utilizes ion gradients to generate torque and facilitate the movement of the flagella, allowing for motility and navigation in various environments. This system exemplifies the function of biomolecular motors in biological organisms, showcasing their role in cellular movement and behavior.
Cargo transport: Cargo transport refers to the mechanism through which various types of cellular materials, such as proteins and organelles, are moved within a cell or between cells. This process is essential for maintaining cellular function, as it ensures that important substances reach their designated locations. Cargo transport relies on specific molecular motors that facilitate movement along cytoskeletal tracks, like microtubules and actin filaments, enabling the distribution of materials necessary for cellular activities.
Directionality: Directionality refers to the inherent orientation of biomolecular motors in which they move along specific paths or tracks in a defined direction. This characteristic is crucial for various cellular processes, as it ensures that molecular transport, such as the movement of proteins and organelles, occurs in an organized manner. The ability to move in a particular direction is linked to the structural asymmetry and motor function of these biomolecules.
Drug Delivery Systems: Drug delivery systems are advanced technologies designed to transport therapeutic agents to specific sites in the body in a controlled manner, enhancing the efficacy and safety of treatments. These systems can improve the pharmacokinetics and bioavailability of drugs, making them critical in modern medicine.
Dynein: Dynein is a type of motor protein that moves along microtubules in cells, transporting cellular cargo toward the minus end of the microtubule. It plays a crucial role in various cellular processes, including intracellular transport, cell division, and the movement of cilia and flagella. Dynein operates through ATP hydrolysis, converting chemical energy into mechanical work to facilitate movement within the cellular environment.
Energy Landscape: The energy landscape refers to the graphical representation of the potential energy of a system as a function of its configuration or conformation. This concept helps visualize how biomolecular motors navigate through various energy states, revealing how they can efficiently convert chemical energy into mechanical work while overcoming energy barriers.
Force generation: Force generation refers to the process by which biomolecular motors convert chemical energy into mechanical work, allowing them to produce movement at the molecular level. This fundamental ability is essential for various cellular functions, such as transport, muscle contraction, and cellular division. Understanding force generation is key to comprehending how these motors operate within the complex environment of living cells.
Kinesin: Kinesin is a type of motor protein that plays a crucial role in intracellular transport by moving along microtubules within cells. These proteins are essential for the movement of various cellular components, including organelles and vesicles, ensuring that materials are delivered where they are needed for cellular function. Kinesins utilize the energy from ATP hydrolysis to facilitate their movement, making them vital for processes such as cell division and neuronal transport.
Mechanochemical coupling: Mechanochemical coupling refers to the process where mechanical energy is converted into chemical energy within biomolecular motors, enabling them to perform work at the molecular level. This conversion is crucial for many biological functions, as it allows the motors to facilitate processes like cellular movement, transport of molecules, and muscle contraction through coordinated mechanical and chemical actions.
Microtubules: Microtubules are cylindrical structures made of tubulin protein subunits that play a crucial role in maintaining the shape, organization, and transport functions within eukaryotic cells. They are one of the main components of the cytoskeleton, providing structural support, facilitating cell division, and serving as tracks for biomolecular motors to transport cellular cargo. Their dynamic nature allows them to grow and shrink, enabling cellular responses to changes in the environment.
Nano-machines: Nano-machines are tiny devices or systems that operate at the nanoscale, typically ranging from 1 to 100 nanometers in size. They are designed to perform specific tasks, often mimicking biological processes or mechanisms, and have significant applications in medicine, drug delivery, and materials science. By functioning at such a small scale, these machines can interact with biomolecules and cells, enabling innovative approaches to diagnostics and therapeutics.
Optical tweezers: Optical tweezers are scientific tools that use highly focused laser beams to manipulate and trap microscopic particles, such as cells and biomolecules, with precision. This technology allows researchers to study the mechanical properties of biomolecular motors and other cellular components by applying forces on the nanoscale, enabling a deeper understanding of molecular interactions and dynamics.
Processivity: Processivity refers to the ability of an enzyme, particularly a biomolecular motor, to catalyze consecutive reactions without releasing its substrate. This characteristic is crucial for efficient cellular functions, as it allows motors like kinesin and dynein to move along cytoskeletal filaments while carrying their cargo. Processivity enhances the speed and effectiveness of these motors, making them essential for various cellular transport processes.
Single-molecule tracking: Single-molecule tracking is a technique that allows researchers to observe and analyze the behavior of individual molecules in real-time. This method provides insights into the dynamics and interactions of biomolecules at an unprecedented level of detail, which is crucial for understanding complex biological processes and the function of molecular motors.
Speed: Speed refers to the rate at which biomolecular motors move along cellular structures, often measured in micrometers per second. This movement is critical for various cellular processes, such as transport of organelles, intracellular signaling, and muscle contraction. The efficiency and directionality of these motors can significantly influence the overall functionality of the cell.
Synthetic motor proteins: Synthetic motor proteins are engineered molecular machines that mimic the natural movement and function of biological motor proteins found in living organisms. These artificially created proteins can convert chemical energy into mechanical work, allowing for targeted movement and manipulation at the nanoscale, which is crucial for various applications in nanotechnology and biotechnology.