nanobiotechnology unit 4 study guides

What's the Big Deal?

• Nanofluidics enables precise control and manipulation of fluids at the nanoscale level (1-100 nm)
• Lab-on-a-chip systems integrate multiple laboratory functions onto a single chip, revolutionizing diagnostic testing and research
  • Allows for rapid, high-throughput analysis of biological samples (blood, saliva, urine)
  • Reduces sample and reagent volumes, minimizing waste and costs
• Offers significant advantages over traditional laboratory methods, including portability, automation, and real-time analysis
• Enables point-of-care testing, bringing diagnostic capabilities to remote or resource-limited settings
• Has the potential to personalize medicine by tailoring treatments based on an individual's genetic profile or disease markers
• Facilitates the development of organ-on-a-chip models for drug screening and toxicology studies
• Contributes to advancements in fields such as genomics, proteomics, and single-cell analysis

Key Concepts to Know

• Microfluidics involves the manipulation of fluids at the microscale level (1-1000 µm), while nanofluidics focuses on the nanoscale level (1-100 nm)
• Reynolds number ($Re = \frac{\rho vL}{\mu}$) characterizes the flow regime in microfluidic and nanofluidic systems
  • Low Reynolds numbers indicate laminar flow, while high Reynolds numbers indicate turbulent flow
• Surface-to-volume ratio increases significantly at the nanoscale, making surface effects dominant over bulk properties
• Nanofluidic channels exhibit unique phenomena such as ion selectivity, double-layer overlap, and entropic barriers
• Diffusion plays a crucial role in mass transport within nanofluidic systems due to the small length scales involved
• Electrokinetic effects, including electrophoresis and electroosmosis, are commonly used for fluid and particle manipulation in lab-on-a-chip devices
• Microfluidic valves and pumps enable precise control over fluid flow and mixing within the chip
• Droplet microfluidics allows for the generation and manipulation of discrete droplets, enabling high-throughput screening and single-cell analysis

How It Actually Works

• Lab-on-a-chip systems are fabricated using microfabrication techniques borrowed from the semiconductor industry
  • Photolithography is used to create patterns on a substrate (silicon, glass, or polymer)
  • Etching processes (wet or dry) selectively remove material to form microfluidic channels and features
• Fluid flow in microfluidic channels is typically driven by pressure gradients, capillary forces, or electrokinetic mechanisms
• Passive mixing occurs through diffusion, while active mixing can be achieved using micromixers (serpentine channels, herringbone structures)
• Nanofluidic channels are fabricated using advanced techniques such as electron beam lithography or nanoimprint lithography
• In nanofluidic systems, the electric double layer (EDL) becomes significant when the channel dimensions are comparable to the Debye length
  • The EDL consists of ions that screen the surface charge, resulting in a non-uniform ion distribution near the channel walls
• Ion selectivity in nanofluidic channels arises from the overlap of EDLs, leading to charge-based filtration and separation
• Entropic barriers in nanofluidic channels can be used for size-based separation of biomolecules (DNA, proteins)
• Surface functionalization techniques (self-assembled monolayers, polymer coatings) are employed to control the surface properties and bio-compatibility of the chip

Real-World Applications

• Point-of-care diagnostics for infectious diseases (HIV, malaria, COVID-19) and chronic conditions (diabetes, cardiovascular disease)
  • Rapid, on-site testing enables early detection and timely treatment
• Liquid biopsy for cancer diagnostics and monitoring
  • Isolation and analysis of circulating tumor cells (CTCs) or cell-free DNA (cfDNA) from blood samples
• Organ-on-a-chip models for drug discovery and toxicology studies
  • Mimics the physiological microenvironment of human organs, providing more accurate predictions of drug efficacy and safety
• Single-cell analysis for studying cellular heterogeneity and rare cell populations
  • Enables the investigation of individual cell behavior, gene expression, and drug response
• Environmental monitoring and water quality assessment
  • Detection of contaminants, pathogens, and chemical pollutants in water samples
• Forensic analysis and DNA profiling
  • Rapid, on-site processing of biological evidence for criminal investigations
• Food safety and quality control
  • Detection of foodborne pathogens, allergens, and contaminants in food products

Lab Techniques and Tools

• Soft lithography for fabricating microfluidic devices using elastomeric materials (PDMS)
  • Replica molding, microcontact printing, and microfluidic patterning
• 3D printing for rapid prototyping and fabrication of microfluidic devices
  • Stereolithography (SLA), fused deposition modeling (FDM), and polyjet printing
• Microfluidic valves and pumps for fluid control and automation
  • Pneumatic valves, peristaltic pumps, and centrifugal pumps
• Droplet generators for creating monodisperse droplets
  • T-junction, flow-focusing, and co-flow geometries
• Microfluidic mixers for efficient mixing of fluids
  • Passive mixers (serpentine channels, herringbone structures) and active mixers (acoustic, magnetic, electrokinetic)
• Microfluidic separators for particle and cell sorting
  • Deterministic lateral displacement (DLD), pinched flow fractionation (PFF), and inertial focusing
• Nanofluidic sensors for detecting biomolecules and chemical species
  • Nanopores, nanowires, and nanofluidic field-effect transistors (FETs)
• Imaging techniques for visualizing and quantifying nanofluidic phenomena
  • Fluorescence microscopy, super-resolution microscopy, and electron microscopy

Challenges and Limitations

• Fabrication of nanofluidic devices requires advanced nanofabrication techniques and facilities
  • High costs and technical expertise associated with nanofabrication processes
• Integration of multiple functionalities on a single chip can be complex and challenging
  • Requires careful design and optimization of individual components and their interfaces
• Scaling up from prototype to mass production can be difficult due to manufacturing constraints and quality control issues
• Standardization and reproducibility of lab-on-a-chip devices across different laboratories and users
  • Lack of universal standards and protocols for device fabrication, operation, and data analysis
• Sample preparation and handling can be challenging, especially for complex biological samples (blood, tissue)
  • Matrix effects, sample variability, and contamination can affect the accuracy and reliability of the results
• Regulatory and ethical considerations for the use of lab-on-a-chip devices in clinical settings
  • Need for rigorous validation, clinical trials, and regulatory approval before widespread adoption
• Long-term stability and reliability of lab-on-a-chip devices under various environmental conditions
  • Potential for device failure, leakage, or contamination during storage and transportation

Future Directions

• Integration of lab-on-a-chip devices with smartphones and wearable devices for real-time, continuous monitoring
  • Enables remote health monitoring, personalized medicine, and early disease detection
• Development of multi-organ-on-a-chip systems for more comprehensive drug testing and disease modeling
  • Allows for the study of organ-organ interactions and systemic effects of drugs and diseases
• Incorporation of machine learning and artificial intelligence for automated data analysis and decision-making
  • Improves the accuracy, speed, and reliability of diagnostic and prognostic predictions
• Exploration of new materials and fabrication techniques for enhanced performance and functionality
  • Biodegradable and biocompatible materials, 3D printing of complex structures, and self-assembling nanostructures
• Expansion of lab-on-a-chip applications beyond healthcare and into fields such as environmental monitoring, food safety, and space exploration
  • Enables in-situ analysis and real-time decision-making in remote or extreme environments
• Integration of nanofluidic devices with other emerging technologies, such as organ-on-a-chip, 3D bioprinting, and synthetic biology
  • Creates powerful platforms for studying complex biological systems and developing innovative therapies
• Development of portable, low-cost, and user-friendly lab-on-a-chip devices for resource-limited settings
  • Addresses global health challenges and promotes health equity in underserved populations

Cool Facts and Trivia

• The concept of a lab-on-a-chip was first proposed by Andreas Manz in 1990, who envisioned miniaturizing entire laboratories onto a single chip
• The first commercial lab-on-a-chip device was the Agilent 2100 Bioanalyzer, introduced in 1999 for DNA and RNA analysis
• The smallest nanofluidic channel ever created has a cross-section of only 1 nm × 1 nm, which is smaller than the size of a single DNA molecule
• The world's smallest medical robot is a nanofluidic device that can navigate through the bloodstream and deliver drugs to targeted sites in the body
• In 2018, researchers developed a lab-on-a-chip device that can detect cancer cells in blood with a sensitivity of 1 cell per milliliter of blood
• The market for lab-on-a-chip devices is expected to reach $12.85 billion by 2025, driven by the increasing demand for point-of-care diagnostics and personalized medicine
• Lab-on-a-chip technology has been used to create "organs-on-chips" that mimic the function of human organs, such as the lung, liver, and heart
• In 2020, a lab-on-a-chip device was developed to rapidly detect SARS-CoV-2, the virus that causes COVID-19, from saliva samples in less than 30 minutes