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🦠Microbiology

Common Bacterial Pathogens

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Why This Matters

Understanding bacterial pathogens isn't just about memorizing names and diseases—you're being tested on the underlying mechanisms that make certain bacteria dangerous and others manageable. Exams will probe your knowledge of virulence factors, transmission routes, antibiotic resistance mechanisms, and host-pathogen interactions. When you understand why Mycobacterium tuberculosis has a waxy cell wall or how Pseudomonas aeruginosa forms biofilms, you're grasping the principles that explain bacterial survival strategies across species.

These pathogens also illustrate core microbiology concepts like Gram staining classification, toxin production, immune evasion, and opportunistic versus primary infection. Rather than creating a mental list of "bacteria and the diseases they cause," focus on grouping these organisms by their mechanisms of pathogenicity. When an FRQ asks you to compare two pathogens or explain why certain populations are vulnerable, you'll be ready because you understand the how and why—not just the what.


Gastrointestinal Pathogens

These bacteria target the digestive system, using various strategies to colonize, damage tissue, or produce toxins. Their transmission typically follows the fecal-oral route, making food safety and hygiene the primary prevention strategies.

Escherichia coli (E. coli)

  • Most strains are commensal gut flora—pathogenic strains like O157:H7 produce Shiga toxin, causing hemorrhagic colitis
  • Transmission occurs through contaminated food or water, particularly undercooked ground beef and unpasteurized products
  • Gram-negative rod that serves as a model organism in microbiology research due to its well-characterized genetics

Salmonella enterica

  • Major cause of foodborne gastroenteritis—associated with undercooked poultry, eggs, and contaminated produce
  • Facultative intracellular pathogen that invades intestinal epithelial cells and survives within macrophages
  • Self-limiting infection in healthy individuals, but can cause severe systemic disease in immunocompromised patients

Helicobacter pylori

  • Colonizes the stomach lining using urease enzyme to neutralize gastric acid and create a survivable microenvironment
  • Causative agent of peptic ulcers and gastric cancer—overturned the belief that ulcers were caused by stress alone
  • Gram-negative, spiral-shaped bacterium with flagella enabling motility through mucus; treatment requires combination antibiotic therapy

Compare: E. coli vs. Salmonella—both are Gram-negative rods transmitted through contaminated food, but Salmonella is an intracellular pathogen that invades host cells while pathogenic E. coli strains typically cause damage through toxin production. If asked about invasion versus toxin-mediated disease, this distinction is key.


Respiratory Pathogens

These organisms spread through airborne droplets and primarily target the respiratory system. Their success depends on evading mucosal defenses and, in some cases, the immune system's attempts at phagocytosis.

Streptococcus pneumoniae

  • Leading cause of community-acquired pneumonia, bacterial meningitis, and otitis media (ear infections)
  • Polysaccharide capsule is the primary virulence factor—prevents phagocytosis by masking bacterial surface antigens
  • Vaccine-preventable disease—conjugate vaccines target capsular serotypes and are critical for protecting children and elderly populations

Mycobacterium tuberculosis

  • Causative agent of tuberculosis (TB)—primarily affects lungs but can disseminate to other organs (miliary TB)
  • Mycolic acid-rich cell wall makes it acid-fast, resistant to drying, and difficult to treat with standard antibiotics
  • Slow-growing obligate aerobe that survives within macrophages; requires months of multi-drug therapy to prevent resistance

Neisseria meningitidis

  • Causes bacterial meningitis and meningococcemia—particularly dangerous in adolescents and young adults in close quarters
  • Gram-negative diplococcus with a polysaccharide capsule that enables bloodstream survival and CNS invasion
  • Respiratory droplet transmission makes vaccination essential for college students and military recruits

Compare: S. pneumoniae vs. N. meningitidis—both cause bacterial meningitis and use capsules to evade phagocytosis, but S. pneumoniae is Gram-positive while N. meningitidis is Gram-negative. Both are vaccine-preventable, making them frequent exam topics on immunization strategies.


Opportunistic and Nosocomial Pathogens

These bacteria primarily cause disease in immunocompromised hosts or healthcare settings. Their virulence often stems from antibiotic resistance mechanisms and biofilm formation rather than potent toxins.

Pseudomonas aeruginosa

  • Opportunistic pathogen affecting burn patients, cystic fibrosis patients, and those with indwelling catheters
  • Intrinsic and acquired antibiotic resistance—outer membrane porins limit drug entry; efflux pumps actively remove antibiotics
  • Biofilm formation on medical devices and in CF patient lungs makes eradication extremely difficult

Staphylococcus aureus

  • Versatile pathogen causing skin infections (boils, impetigo), pneumonia, endocarditis, and sepsis
  • MRSA (methicillin-resistant S. aureus) carries the mecA gene encoding altered penicillin-binding proteins
  • Toxin producer—enterotoxins cause food poisoning; TSST-1 causes toxic shock syndrome; Panton-Valentine leukocidin destroys white blood cells

Clostridium difficile

  • Primary cause of antibiotic-associated diarrhea and pseudomembranous colitis—overgrows when normal flora is disrupted
  • Toxin A and Toxin B damage intestinal epithelium, causing severe inflammation and characteristic pseudomembrane formation
  • Spore-forming anaerobe—spores persist on surfaces and resist alcohol-based sanitizers, requiring bleach for decontamination

Compare: P. aeruginosa vs. S. aureus—both are major nosocomial pathogens with significant antibiotic resistance, but Pseudomonas is Gram-negative and relies on biofilms while S. aureus is Gram-positive and produces a wider array of toxins. FRQs on hospital infection control often feature one or both.


Foodborne Pathogens with Unique Survival Strategies

Some bacteria have evolved specific adaptations that make them particularly dangerous in food production and storage environments.

Listeria monocytogenes

  • Can replicate at refrigeration temperatures (4°C)—unique among foodborne pathogens, making cold storage insufficient for prevention
  • Facultative intracellular pathogen that uses actin polymerization to move between host cells, evading antibody-mediated immunity
  • High mortality in vulnerable populations—pregnant women, neonates, elderly, and immunocompromised individuals at greatest risk for meningitis and septicemia

Compare: Listeria vs. Salmonella—both are foodborne and can cause systemic disease, but Listeria's ability to grow at refrigeration temperatures and cross the placental barrier makes it uniquely dangerous during pregnancy. This is a high-yield distinction for food safety questions.


Quick Reference Table

ConceptBest Examples
Capsule-mediated immune evasionS. pneumoniae, N. meningitidis
Toxin-mediated diseaseS. aureus, C. difficile, E. coli O157:H7
Intracellular survivalSalmonella, Listeria, M. tuberculosis
Biofilm formationP. aeruginosa, S. aureus
Antibiotic resistance mechanismsMRSA, P. aeruginosa, M. tuberculosis
Fecal-oral transmissionE. coli, Salmonella, H. pylori
Respiratory droplet transmissionM. tuberculosis, N. meningitidis, S. pneumoniae
Vaccine-preventable diseasesS. pneumoniae, N. meningitidis

Self-Check Questions

  1. Which two pathogens use polysaccharide capsules to evade phagocytosis, and how does this inform vaccine development strategies?

  2. Compare and contrast the antibiotic resistance mechanisms of MRSA and Pseudomonas aeruginosa—what makes each difficult to treat?

  3. If an FRQ asks about intracellular pathogens, which three organisms from this list would be your strongest examples, and what survival strategy does each use inside host cells?

  4. Why is Listeria monocytogenes considered uniquely dangerous compared to other foodborne pathogens like Salmonella, particularly for pregnant women?

  5. A patient develops severe diarrhea after completing a course of broad-spectrum antibiotics. Which pathogen is most likely responsible, and what mechanism explains why antibiotic use predisposes patients to this infection?