biotechnology 3 unit 9 study guides

What's Spectrophotometry?

• Analytical technique that measures the interaction between light and matter
• Quantifies the absorption, transmission, or reflection of light by a sample
• Utilizes the principles of the electromagnetic spectrum and the behavior of light
• Enables the determination of a sample's concentration, purity, or composition
• Widely used in various fields, including biotechnology, chemistry, and physics
• Provides accurate and precise measurements of a sample's optical properties
• Relies on the use of a specialized instrument called a spectrophotometer

Key Principles of Light and Matter

• Light behaves as both a wave and a particle (photons)
• Different wavelengths of light correspond to different colors and energies
• Matter can absorb, transmit, or reflect light depending on its properties
• Absorption occurs when a molecule or atom takes in a photon's energy
  • The absorbed energy can cause electronic transitions or molecular vibrations
• Transmission refers to the passage of light through a sample without being absorbed
• Reflection happens when light bounces off a sample's surface
• The relationship between light absorption and concentration is described by the Beer-Lambert law:
  • $A = \epsilon bc$, where $A$ is absorbance, $\epsilon$ is the molar attenuation coefficient, $b$ is the path length, and $c$ is the concentration

Spectrophotometer Components and How They Work

• Light source generates a beam of light with a specific wavelength range (deuterium lamp for UV, tungsten lamp for visible)
• Monochromator selects a narrow band of wavelengths from the light source
  • Typically uses a diffraction grating or prism to disperse light
• Sample holder or cuvette contains the sample to be analyzed
• Detector measures the intensity of light that passes through or is reflected by the sample (photomultiplier tube or photodiode)
• Readout device displays the absorbance or transmittance values
• Some spectrophotometers include additional components like beam splitters or reference cells
• The spectrophotometer compares the intensity of light before and after interacting with the sample to calculate absorbance or transmittance

Types of Spectrophotometry Techniques

• UV-Visible spectrophotometry measures absorption in the ultraviolet and visible light regions
  • Commonly used for quantifying proteins, nucleic acids, and small molecules
• Infrared (IR) spectrophotometry measures absorption in the infrared region
  • Provides information about the functional groups and molecular structure of a sample
• Atomic absorption spectrophotometry (AAS) measures the absorption of light by atomized samples
  • Used for elemental analysis and determining metal concentrations
• Fluorescence spectrophotometry measures the emission of light by a sample after excitation
  • Highly sensitive technique for detecting fluorescent compounds or labeled molecules
• Raman spectrophotometry measures the inelastic scattering of light by a sample
  • Provides information about the vibrational and rotational modes of molecules

Sample Preparation and Measurement Basics

• Samples must be prepared in a suitable solvent that does not interfere with the measurement
• Liquid samples are typically placed in a cuvette, a small transparent container
  • Cuvettes can be made of plastic, glass, or quartz, depending on the wavelength range
• Solid samples may require dissolution, grinding, or making a thin film
• The sample should be homogeneous and free of particles that could scatter light
• Blank or reference samples are used to calibrate the spectrophotometer and account for background absorption
• Measurements are taken by placing the sample in the spectrophotometer and selecting the appropriate wavelength
• The spectrophotometer displays the absorbance or transmittance values, which can be used to calculate the sample's concentration

Calibration: Why It's Crucial

• Calibration ensures the accuracy and reliability of spectrophotometric measurements
• Accounts for variations in the instrument's performance over time
• Corrects for any inherent biases or systematic errors in the measurement process
• Establishes a relationship between the measured absorbance and the known concentration of a standard
• Allows for the quantitative determination of unknown sample concentrations
• Calibration is performed using a series of standards with known concentrations
  • Standards are prepared by diluting a stock solution of the analyte of interest
• Regular calibration is essential for maintaining the quality and reproducibility of results

Creating and Using Calibration Curves

• A calibration curve is a graph that plots the absorbance of standards against their known concentrations
• To create a calibration curve:
  1. Prepare a series of standards with known concentrations of the analyte
  2. Measure the absorbance of each standard at the selected wavelength
  3. Plot the absorbance values on the y-axis and the corresponding concentrations on the x-axis
  4. Fit a linear regression line to the data points
• The slope of the calibration curve represents the molar attenuation coefficient ($\epsilon$) multiplied by the path length ($b$)
• The y-intercept of the calibration curve should ideally be zero, indicating no absorbance when the concentration is zero
• To determine the concentration of an unknown sample:
  1. Measure the absorbance of the sample at the same wavelength used for the calibration curve
  2. Use the calibration curve equation to calculate the concentration based on the measured absorbance

Real-World Applications in Biotech

• Quantifying protein concentration using the Bradford, Lowry, or BCA assay
• Measuring the purity and concentration of nucleic acids (DNA or RNA)
• Monitoring the growth of bacterial or yeast cultures by measuring the optical density at 600 nm (OD600)
• Assessing the activity of enzymes by measuring the formation or depletion of a chromogenic substrate
• Determining the concentration of small molecules, such as drugs, metabolites, or cofactors
• Evaluating the quality and composition of complex mixtures, like cell lysates or fermentation broths
• Monitoring the progress of purification processes, such as chromatography or electrophoresis
• Detecting the presence of contaminants or impurities in biological samples

Common Pitfalls and Troubleshooting

• Improper sample preparation, such as incomplete dissolution or the presence of interfering substances
  • Ensure samples are fully dissolved and free of particles or debris
• Using the wrong type of cuvette for the wavelength range of interest
  • Use quartz cuvettes for UV measurements and plastic or glass cuvettes for visible light
• Failing to properly blank or calibrate the spectrophotometer
  • Always use a blank sample to zero the instrument before measurements
• Not accounting for the sample's pH or ionic strength, which can affect the absorption properties
  • Use buffers to maintain a consistent pH and ionic strength across samples
• Measuring samples with absorbance values outside the linear range of the instrument
  • Dilute samples to bring the absorbance within the linear range (typically 0.1 to 1.0)
• Contamination of cuvettes or samples, leading to inaccurate readings
  • Clean cuvettes thoroughly and use fresh samples for each measurement
• Instrument malfunction or drift, causing inconsistent results
  • Perform regular maintenance and calibration of the spectrophotometer