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Biochemistry

🧬biochemistry review

3.2 Enzyme Kinetics and Mechanisms

Last Updated on August 9, 2024

Enzymes are protein powerhouses that speed up chemical reactions in our bodies. They work by lowering the energy needed to start reactions, making life processes happen faster. Without enzymes, many vital functions would be too slow to sustain life.

Enzyme kinetics helps us understand how fast enzymes work and what affects their speed. By studying factors like substrate concentration and temperature, we can figure out how to make enzymes work better or how to slow them down when needed.

Enzyme Basics

Fundamental Concepts of Enzyme Function

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  • Catalysis accelerates chemical reactions without being consumed in the process
  • Active site forms a specific region on the enzyme where substrates bind and reactions occur
  • Substrate serves as the reactant molecule that binds to the enzyme's active site
  • Transition state represents the highest energy configuration during a reaction, stabilized by enzymes
  • Activation energy refers to the minimum energy required to initiate a chemical reaction, lowered by enzymes
  • Enzyme-substrate complex forms when a substrate binds to an enzyme's active site, initiating the catalytic process

Enzyme Structure and Binding Mechanisms

  • Enzymes consist of protein molecules with specific three-dimensional shapes crucial for their function
  • Lock and key model describes the precise fit between an enzyme's active site and its substrate
  • Induced fit model explains how enzymes slightly change shape upon substrate binding for optimal catalysis
  • Cofactors (metal ions) and coenzymes (organic molecules) often assist enzymes in catalyzing reactions
  • Allosteric regulation involves binding of molecules to sites other than the active site, affecting enzyme activity
  • Competitive inhibition occurs when molecules similar to the substrate bind to the active site, blocking substrate access

Michaelis-Menten Kinetics

Understanding Enzyme Kinetics Parameters

  • Michaelis-Menten kinetics describes the relationship between substrate concentration and reaction rate
  • Km (Michaelis constant) represents the substrate concentration at which the reaction rate is half of Vmax
  • Vmax indicates the maximum reaction rate achieved when all enzyme molecules are saturated with substrate
  • Reaction rate increases with substrate concentration until it reaches Vmax, following a hyperbolic curve
  • Lineweaver-Burk plot transforms Michaelis-Menten data into a linear form for easier analysis of Km and Vmax

Factors Influencing Enzyme Kinetics

  • Substrate concentration affects reaction rate, with higher concentrations leading to faster rates until saturation
  • Temperature impacts enzyme kinetics, generally increasing reaction rates up to an optimal temperature
  • pH influences enzyme activity by affecting the ionization state of amino acid residues in the active site
  • Enzyme concentration directly affects the reaction rate, with more enzyme molecules leading to faster rates
  • Product inhibition occurs when reaction products bind to the enzyme, slowing down the overall reaction rate
  • Allosteric effectors can modify enzyme kinetics by binding to regulatory sites and altering enzyme conformation

Catalytic Efficiency

Measuring Enzyme Performance

  • Kcat (catalytic constant) represents the maximum number of substrate molecules converted to product per enzyme molecule per second
  • Turnover number equates to Kcat, indicating how quickly an enzyme can process its substrate
  • Catalytic efficiency combines Kcat and Km (Kcat/Km) to assess an enzyme's overall effectiveness
  • Diffusion-limited enzymes operate at the theoretical maximum efficiency, processing substrates as quickly as they encounter them
  • Substrate specificity influences catalytic efficiency, with highly specific enzymes often showing greater efficiency for their particular substrates
  • Enzyme evolution has led to the optimization of catalytic efficiency in many biological systems