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Biochemistry

🧬biochemistry review

10.1 Prokaryotic Gene Regulation

Last Updated on August 9, 2024

Prokaryotic gene regulation is all about efficiency. Operons group related genes together, allowing bacteria to quickly respond to environmental changes. This system helps them survive in diverse conditions by turning genes on or off as needed.

The lac and trp operons are classic examples of this regulation. They show how bacteria control sugar metabolism and amino acid production, adapting to available nutrients. These mechanisms highlight the elegance of prokaryotic gene control.

Operon Structure and Components

Key Elements of Prokaryotic Gene Regulation

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  • Operon functions as a coordinated unit of gene expression in prokaryotes
  • Operator acts as a binding site for regulatory proteins controlling gene transcription
  • Promoter serves as the recognition and binding site for RNA polymerase initiating transcription
  • Repressor binds to the operator preventing RNA polymerase from transcribing genes

Operon Organization and Function

  • Operons consist of structural genes encoding proteins involved in related metabolic pathways
  • Regulatory genes located separately from the operon control expression of structural genes
  • Polycistronic mRNA produced from operon transcription contains multiple coding sequences
  • Operons allow for efficient regulation of multiple genes involved in related cellular processes

Types of Regulatory Systems

Inducible and Repressible Systems

  • Inducible system remains off by default activates in response to specific environmental signals
  • Repressible system remains on by default deactivates in response to specific environmental signals
  • Both systems involve regulatory proteins interacting with operator sequences
  • Inducers bind to repressor proteins in inducible systems preventing operator binding
  • Corepressors bind to repressor proteins in repressible systems enabling operator binding

Catabolite Repression

  • Catabolite repression regulates expression of genes involved in alternative carbon source metabolism
  • Glucose presence triggers catabolite repression suppressing genes for other sugar metabolism
  • cAMP receptor protein (CRP) acts as a positive regulator for alternative sugar operons
  • Low glucose levels increase cAMP concentration promoting CRP binding and gene expression
  • Catabolite repression ensures efficient energy utilization by prioritizing preferred carbon sources

Specific Operon Examples

Lac Operon Regulation

  • Lac operon controls genes for lactose metabolism in E. coli
  • Consists of structural genes lacZ, lacY, and lacA encoding enzymes for lactose utilization
  • Regulatory gene lacI produces lac repressor protein controlling operon expression
  • Allolactose (lactose metabolite) acts as an inducer binding to lac repressor
  • Inducer-bound repressor cannot bind operator allowing RNA polymerase to transcribe lac genes

Trp Operon Regulation

  • Trp operon regulates tryptophan biosynthesis genes in E. coli
  • Contains five structural genes encoding enzymes for tryptophan synthesis
  • Repressor protein produced by trpR gene regulates operon expression
  • Tryptophan acts as a corepressor binding to repressor protein
  • Tryptophan-bound repressor binds operator preventing transcription of trp genes
  • Trp operon demonstrates repressible regulation conserving energy when tryptophan is abundant