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Adjacency matrix

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Systems Biology

Definition

An adjacency matrix is a square matrix used to represent a finite graph, where the elements indicate whether pairs of vertices are adjacent or not in the graph. Each row and column of the matrix corresponds to a vertex, and a value of 1 indicates the presence of an edge between the vertices, while a value of 0 indicates no edge. This matrix is a fundamental tool in graph theory and network representation, facilitating the analysis of relationships and connections within the graph.

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5 Must Know Facts For Your Next Test

  1. The adjacency matrix for an undirected graph is symmetric, meaning that if there is an edge from vertex A to vertex B, there will also be an edge from vertex B to vertex A.
  2. In a directed graph, the adjacency matrix may not be symmetric as edges have directions, which may lead to different values for (A,B) and (B,A).
  3. The size of the adjacency matrix grows with the number of vertices, specifically it has dimensions n x n, where n is the number of vertices.
  4. The adjacency matrix can be used to efficiently compute paths and connectivity properties within the graph using matrix operations.
  5. Adjacency matrices are commonly used in algorithms for searching and analyzing graphs, such as depth-first search (DFS) and breadth-first search (BFS).

Review Questions

  • How does an adjacency matrix represent relationships between vertices in both undirected and directed graphs?
    • In an undirected graph, an adjacency matrix uses symmetrical values to represent relationships; if vertex A is connected to vertex B, both (A,B) and (B,A) will be marked with a 1. In contrast, for directed graphs, the adjacency matrix may reflect asymmetrical connections since an edge from A to B does not imply an edge from B to A. This distinction allows for clear representation of one-way and two-way relationships between vertices.
  • Discuss the advantages and disadvantages of using an adjacency matrix for representing graphs.
    • Using an adjacency matrix allows for quick access to check whether two vertices are connected, making it efficient for dense graphs. However, it can be less memory efficient for sparse graphs since it requires storage for every possible edge even if many do not exist. The size of the matrix grows quadratically with the number of vertices, potentially leading to high resource consumption as the graph scales up.
  • Evaluate how an adjacency matrix can be leveraged in algorithms for graph traversal and connectivity analysis.
    • An adjacency matrix can be utilized in algorithms like depth-first search (DFS) and breadth-first search (BFS) by providing a straightforward means to check for connections between vertices. By performing operations on the adjacency matrix, such as raising it to powers or applying Boolean algebra, one can efficiently determine paths and connectivity within the graph. This capability makes it invaluable for applications like social network analysis or biological network modeling, where understanding relationships is crucial.
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