13.2 Marine life tracking and habitat assessment

8 min readjuly 30, 2024

Underwater robots are revolutionizing marine life tracking and habitat assessment. These high-tech machines, equipped with sensors and cameras, collect valuable data on marine species and their environments. They can access deep-sea areas, creating detailed 3D models and maps for conservation efforts.

These robots gather a wealth of information through various methods. capture detailed imagery, while detect marine life using sound waves. Environmental sensors monitor water quality, and sampling devices collect specimens for further analysis. This data helps scientists understand marine ecosystems better than ever before.

Underwater Robotics for Marine Monitoring

Applications of Underwater Robots in Marine Life Monitoring

  • Underwater robots (AUVs and ROVs) equipped with sensors and cameras collect data on marine life and habitats
  • systems (hydrophones, acoustic tags) integrated with underwater robots track movement and behavior of marine animals over extended periods
  • Underwater robots programmed to follow specific transects or grid patterns systematically survey marine habitats and collect data on species distribution, abundance, and diversity
  • applied to data collected by underwater robots automatically detect, classify, and count marine species, reducing time and effort for manual analysis
  • Underwater robots access deep-sea and hard-to-reach habitats, enabling study of marine life in previously unexplored areas (, )
  • Data collected by underwater robots create 3D models and maps of marine habitats, providing valuable information for conservation and management efforts (coral reef restoration, marine protected area design)

Data Collection and Analysis for Marine Life Monitoring

  • Underwater robots equipped with high-resolution cameras and imaging systems capture detailed images and videos of marine life and habitats
    • Stereo cameras enable 3D reconstruction of marine environments and accurate size measurements of organisms
    • Hyperspectral imaging systems capture spectral data to identify and differentiate marine species based on their unique spectral signatures
  • Acoustic sensors (echosounders, sonars) on underwater robots detect and localize marine life through sound waves
    • generate 3D point clouds of the water column, revealing the distribution and abundance of fish schools and plankton aggregations
    • with hydrophone arrays detects and classifies marine mammal vocalizations, enabling population assessment and behavior studies
  • Environmental sensors (CTD, dissolved oxygen, pH) on underwater robots collect data on water quality parameters crucial for marine life
    • Data used to assess habitat suitability, monitor environmental changes, and study the impact of human activities (ocean acidification, eutrophication)
  • Biological sampling devices (, ) deployed from underwater robots collect specimens for laboratory analysis
    • Genetic analysis of collected samples reveals population structure, connectivity, and evolutionary relationships among marine species
    • Biochemical analysis of samples provides insights into the trophic interactions and energy flow within marine food webs

Habitat Mapping with Underwater Vehicles

Sonar and Acoustic Techniques for Habitat Mapping

  • Multibeam sonar systems mounted on underwater vehicles generate high-resolution bathymetric maps of the seafloor, revealing detailed topographic features and habitat structures (canyons, seamounts, cold-water coral reefs)
  • Side-scan sonar creates acoustic images of the seafloor, highlighting differences in substrate type, texture, and roughness, which can be used to identify and classify distinct habitat types (sandy bottoms, rocky outcrops, )
  • Acoustic ground discrimination systems (AGDS) analyze backscatter data from multibeam or side-scan sonar to automatically classify seafloor substrate types based on their acoustic properties
  • Sub-bottom profilers use low-frequency acoustic pulses to penetrate the seafloor and image subsurface layers, providing information on sediment thickness, composition, and underlying geological structures that influence habitat distribution

Optical and Sampling Techniques for Habitat Characterization

  • Underwater hyperspectral imaging systems capture high-resolution spectral data, allowing for the identification and mapping of benthic habitats based on their unique spectral signatures (coral species, algal communities, microbial mats)
  • Photomosaicing techniques stitch together overlapping images captured by underwater vehicles to create large-scale, high-resolution visual maps of marine habitats
    • enable the quantification of habitat complexity, rugosity, and biodiversity at multiple spatial scales
    • of photomosaics reveals changes in habitat composition and health over time (coral bleaching events, invasive species spread)
  • and analysis using grab samplers or corers deployed from underwater vehicles provide information on the physical and chemical properties of the seafloor, which can be used to characterize different habitat types
    • Grain size analysis determines the composition and distribution of sediment particles, influencing benthic community structure and ecosystem functions
    • of sediment samples reveals the presence of organic matter, nutrients, and contaminants that affect habitat quality and biological productivity
  • Underwater vehicles equipped with water quality sensors collect data on parameters such as temperature, salinity, pH, and dissolved oxygen, which can be used to assess the suitability of different habitats for marine life
    • Integration of water quality data with habitat maps enables the identification of environmental gradients and ecological niches that shape species distributions
    • Long-term monitoring of water quality parameters helps detect and predict the impacts of climate change and ocean acidification on marine habitats

Marine Life Tracking Data Analysis

Analyzing Animal Movement and Behavior

  • Acoustic telemetry data, including the time, location, and depth of tagged animals, can be used to reconstruct their movement paths and identify key habitats (feeding grounds, breeding areas, migration routes)
    • applied to telemetry data estimate animal positions and behavioral states (foraging, resting, traveling) while accounting for observation errors and environmental variability
    • of telemetry data reveals the connectivity and interactions among different habitats and populations, informing the design of marine protected area networks
  • Analyzing the diving behavior of tagged animals (frequency, duration, depth of dives) provides insights into their foraging strategies and energy expenditure
    • Time-depth recorders (TDRs) and accelerometers measure fine-scale diving patterns and body movements, enabling the classification of behaviors (prey capture, social interactions, energetic costs)
    • Bioenergetic models combine diving data with physiological parameters (metabolic rates, body mass) to estimate the energy requirements and prey consumption of marine predators
  • Comparing the movement patterns of different individuals or populations reveals social interactions (schooling behavior, territorial disputes) and how they vary across space and time
    • identifies the strength and directionality of associations among individuals, providing insights into the role of social structure in shaping population dynamics and resilience
    • Acoustic proximity sensors detect close-range interactions among tagged individuals, enabling the study of mating behavior, parent-offspring relationships, and disease transmission

Integrating Environmental Data and Long-term Tracking

  • Integrating tracking data with environmental data (ocean currents, temperature, productivity) helps identify the factors that influence animal behavior and distribution
    • Habitat suitability models combine animal presence data with environmental variables to predict the spatial distribution of species and identify critical habitats
    • simulate the dispersal of planktonic larvae or passive drifters based on ocean currents, informing the connectivity among populations and the design of marine reserve networks
  • Long-term tracking data can be used to detect changes in animal behavior and migration patterns over time, which may be related to climate change, habitat degradation, or other anthropogenic stressors
    • of movement metrics (home range size, migration timing, route fidelity) reveals trends and shifts in animal behavior in response to environmental variability and human impacts
    • Comparative analysis of historical and contemporary tracking data helps assess the ecological and evolutionary consequences of long-term changes in marine ecosystems (ocean warming, fisheries exploitation, coastal development)

Human Impact on Marine Habitats

Assessing Habitat Degradation and Loss

  • High-resolution habitat maps generated from underwater surveys can be used to identify areas of critical importance for marine biodiversity (coral reefs, seagrass beds, kelp forests) which may be vulnerable to human activities
    • Habitat fragmentation analysis quantifies the degree of habitat connectivity and identifies potential barriers to species movement and gene flow
    • Cumulative impact assessment overlays multiple stressors (fishing pressure, pollution, coastal development) on habitat maps to prioritize areas for conservation and management
  • Comparing habitat maps and species distribution data over time reveals changes in habitat extent, quality, and connectivity, which may be indicative of human impacts (coastal development, fishing, pollution)
    • using multi-temporal remote sensing data (satellite imagery, airborne surveys) quantifies the rate and extent of habitat loss and degradation
    • Landscape pattern analysis measures changes in habitat patch size, shape, and configuration, providing insights into the ecological consequences of habitat fragmentation
  • Underwater surveys can detect physical damage to marine habitats (trawling scars on the seafloor, anchor damage to coral reefs, marine debris accumulation) providing direct evidence of human impacts
    • High-resolution imaging systems (photomosaics, 3D reconstructions) enable the quantification of habitat damage and the assessment of recovery rates
    • Acoustic mapping techniques (side-scan sonar, multibeam echosounder) reveal the extent and intensity of seafloor disturbance caused by bottom fishing gear

Monitoring Water Quality and Pollution

  • Changes in water quality parameters (increased turbidity, nutrient levels, contaminants) detected by underwater sensors can be linked to human activities (dredging, agricultural runoff, industrial discharges)
    • Spatial interpolation methods (kriging, inverse distance weighting) create continuous maps of water quality parameters from discrete sensor measurements, enabling the identification of pollution hotspots and gradients
    • Time series analysis of water quality data reveals temporal patterns and trends related to human activities (seasonal agricultural practices, urban development, wastewater treatment)
  • Biological indicators (benthic invertebrates, fish communities) can be used to assess the ecological impact of water quality degradation on marine ecosystems
    • classify the ecological status of benthic communities based on their sensitivity to organic enrichment and other stressors
    • Biomarkers (enzyme activities, gene expression) measured in sentinel species provide early warning signals of sublethal effects and chronic exposure to pollutants
  • Sediment contamination analysis using samples collected by underwater vehicles provides information on the long-term accumulation and persistence of pollutants in marine habitats
    • Geochemical fingerprinting techniques (stable isotopes, trace elements) identify the sources and pathways of contaminants in sediments (industrial effluents, oil spills, atmospheric deposition)
    • Ecotoxicological bioassays expose sediment-dwelling organisms to contaminated sediments to assess their bioavailability and toxicity

Informing Marine Conservation and Management

  • Shifts in species composition, abundance, or size structure observed in underwater surveys can be used to assess the impact of human activities (overfishing, habitat degradation) on marine communities
    • Biodiversity metrics (species richness, evenness, beta diversity) quantify changes in community structure and composition across impacted and reference sites
    • Size spectra analysis compares the relative abundance of different size classes within a community, providing insights into the effects of size-selective fishing and the trophic structure of the ecosystem
  • Data from underwater surveys can be used to develop spatial management plans (marine protected areas, zoning regulations) to mitigate the impact of human activities on sensitive marine habitats and species
    • Systematic conservation planning tools (Marxan, Zonation) optimize the design of marine protected area networks based on biodiversity targets, habitat representation, and socioeconomic constraints
    • integrate , species distribution, and human use data to balance conservation objectives with sustainable resource utilization
  • Underwater surveys provide baseline data for long-term monitoring programs and the evaluation of management effectiveness
    • compare ecological indicators (species abundance, habitat cover) before and after the implementation of management measures, while accounting for natural variability
    • Adaptive management frameworks incorporate monitoring data into iterative decision-making processes, enabling the refinement of management strategies based on their observed outcomes

Key Terms to Review (40)

3D Photomosaics: 3D photomosaics are composite images created by stitching together multiple two-dimensional photographs to form a three-dimensional representation of a scene or object. This technique allows researchers and scientists to visualize and analyze complex underwater environments, providing crucial insights into marine life tracking and habitat assessment.
Acoustic Sensors: Acoustic sensors are devices that detect sound waves and convert them into electrical signals for analysis. These sensors are crucial in underwater applications, as they can measure distances, map environments, and track marine life using sound propagation, especially where visual methods are limited by murky waters. Their ability to function effectively in various underwater conditions makes them a valuable tool in robotics, exploration, and environmental monitoring.
Acoustic telemetry: Acoustic telemetry is a method used to track the movement and behavior of marine animals by sending and receiving sound waves underwater. This technology enables researchers to gather important data about the habitats and migration patterns of marine life, allowing for effective monitoring and conservation efforts.
Autonomous underwater vehicles (AUVs): Autonomous underwater vehicles (AUVs) are uncrewed, self-propelled robots designed for various underwater tasks without direct human control. They have evolved significantly, becoming crucial tools in ocean exploration, research, and resource management due to their ability to operate in challenging marine environments and gather valuable data.
Autonomy in navigation: Autonomy in navigation refers to the ability of a vehicle or system to operate and navigate independently without human intervention. This concept is particularly important in underwater robotics, where autonomous systems can collect data and perform tasks in challenging marine environments, enhancing marine life tracking and habitat assessment efforts.
Before-After-Control-Impact (BACI) Designs: Before-After-Control-Impact (BACI) designs are a type of experimental framework used to assess the effects of an intervention by comparing measurements taken before and after the intervention, alongside control groups that do not receive the treatment. This approach helps to attribute changes in outcomes specifically to the intervention by controlling for other factors that may influence results. By incorporating both pre- and post-intervention data along with control measures, BACI designs provide a robust method for evaluating ecological impacts, particularly in studies related to marine life tracking and habitat assessment.
Biodiversity monitoring: Biodiversity monitoring is the systematic observation and assessment of the variety of life in a given area, focusing on tracking changes in species populations, habitats, and ecosystems over time. This process helps identify patterns, trends, and potential threats to biodiversity, providing essential data that supports conservation efforts and informs management strategies. By understanding how marine life interacts with its habitat, effective measures can be implemented to preserve ecosystems and maintain their health.
Biotic Indices (AMBI, BENTIX): Biotic indices are numerical values used to assess the quality of ecosystems based on the presence and abundance of specific organisms. They provide insights into the health of marine environments by evaluating biological communities and their responses to environmental changes. Indices like AMBI (Azti's Marine Biotic Index) and BENTIX (Benthic Index) focus on different groups of organisms, helping researchers track marine life and evaluate habitat conditions.
Change Detection Analysis: Change detection analysis is a method used to identify differences in the state of an object or phenomenon by comparing datasets from different times. In the context of marine life tracking and habitat assessment, it helps scientists monitor changes in ecosystems, populations, and environmental conditions over time. By utilizing this analysis, researchers can make informed decisions about conservation efforts and understand how marine habitats are evolving due to factors such as climate change, pollution, or human activities.
Coral reef ecosystems: Coral reef ecosystems are diverse underwater structures formed by colonies of tiny living animals called corals, which secrete calcium carbonate to create a hard skeleton. These ecosystems support an incredible variety of marine life, acting as vital habitats for numerous species and playing a crucial role in the health of oceanic environments.
CTD Sensors: CTD sensors, which stand for Conductivity, Temperature, and Depth sensors, are instruments used in oceanography to measure these three critical parameters of seawater. These sensors are vital for understanding oceanic properties, allowing researchers to collect data on salinity, thermal structure, and water column dynamics, which are essential in both deep-sea exploration and studying marine life habitats.
Data fusion: Data fusion is the process of integrating multiple data sources to produce more accurate, consistent, and useful information than could be obtained from any single source. This approach enhances decision-making and situational awareness by combining various types of data, such as sonar, optical, and chemical readings, to create a comprehensive understanding of underwater environments. In contexts like cave exploration and marine life tracking, data fusion plays a vital role in improving mapping accuracy and monitoring biodiversity.
Dr. Sylvia Earle: Dr. Sylvia Earle is a renowned marine biologist and oceanographer known for her extensive research on marine ecosystems and her advocacy for ocean conservation. As a pioneer in underwater exploration, she has led numerous deep-sea expeditions and has played a significant role in raising awareness about the importance of marine life tracking and habitat assessment in preserving ocean health.
Ecosystem-based management approaches: Ecosystem-based management approaches are strategies that focus on managing natural resources by considering entire ecosystems, including their interactions with human activities. This approach recognizes the interconnectedness of species, habitats, and human influence, aiming to maintain healthy ecosystems that support biodiversity and sustain human livelihoods. By integrating ecological, social, and economic factors, these management strategies help ensure long-term ecosystem health and resilience.
Environmental DNA (eDNA) sampling: Environmental DNA (eDNA) sampling refers to the collection and analysis of genetic material obtained from environmental samples, such as water, soil, or sediment, to identify and monitor species present in a particular habitat. This method has gained popularity for its non-invasive approach to studying marine life, enabling researchers to assess biodiversity, track species distributions, and understand ecosystem health without directly capturing organisms. By analyzing eDNA, scientists can gain insights into the presence of various marine species, including those that are rare or elusive.
Geochemical Analysis: Geochemical analysis is the study of the chemical composition and processes of Earth materials, including water, sediments, and organisms, to understand the environmental conditions and biological interactions. This technique is crucial for investigating the relationships between marine life and their habitats, helping to identify nutrient availability, pollution levels, and overall ecosystem health.
Habitat mapping: Habitat mapping is the process of creating detailed representations of the physical and biological characteristics of marine environments, which are essential for understanding the distribution and dynamics of marine life. This technique involves the use of various data collection methods, including remote sensing and underwater surveys, to assess the habitat types, species distributions, and ecological functions within a specific area. By visualizing these habitats, researchers can monitor changes over time and inform conservation efforts.
High-resolution cameras: High-resolution cameras are advanced imaging devices that capture images with a high level of detail and clarity, often measuring in megapixels to determine their resolution. These cameras play a crucial role in various applications, including marine life tracking and habitat assessment, by providing sharp images that help researchers analyze and monitor underwater ecosystems effectively. Their ability to capture fine details allows for better identification of species and understanding of habitats.
Hydrothermal vents: Hydrothermal vents are fissures in the Earth's surface from which geothermally heated water emerges, typically found on the ocean floor. These unique ecosystems are characterized by extreme conditions, including high temperatures and pressures, and support a diverse range of life forms that rely on chemosynthesis rather than photosynthesis. They are crucial for understanding deep-sea ecosystems and the adaptations of marine organisms to harsh environments.
Lagrangian particle tracking models: Lagrangian particle tracking models are computational methods used to simulate the movement and behavior of particles in a fluid environment based on Lagrangian mechanics. These models track the individual trajectories of particles as they move through the water, providing insights into processes such as dispersion, transport, and interactions with marine life, making them essential for assessing habitats and monitoring marine populations.
Machine learning algorithms: Machine learning algorithms are computational methods that enable systems to learn from data and make predictions or decisions without being explicitly programmed. These algorithms can identify patterns and insights within large datasets, enhancing efficiency and accuracy in various applications, including power distribution and marine life tracking.
Marine Protected Areas (MPAs): Marine Protected Areas (MPAs) are designated regions in oceans or coastal waters where human activities are regulated or restricted to conserve marine ecosystems and biodiversity. These areas play a critical role in protecting habitats, enhancing fish populations, and maintaining overall ocean health by providing safe havens for various marine species. By minimizing human impact, MPAs support essential ecological processes, allowing for research, education, and sustainable use of marine resources.
Multibeam sonar systems: Multibeam sonar systems are advanced underwater surveying tools that utilize multiple sonar beams to map the seafloor and provide detailed information about underwater topography and features. These systems emit sound waves in multiple directions simultaneously, allowing for efficient and comprehensive data collection across wide areas, which is essential for various applications such as marine life tracking and habitat assessment.
Network Analysis: Network analysis refers to the methodical examination of interconnected entities, which allows researchers to understand relationships and patterns within complex systems. In the context of tracking marine life and assessing habitats, network analysis helps in interpreting data from various sources, such as GPS, acoustic sensors, and environmental factors, to visualize and analyze interactions between species and their environments.
Passive acoustic monitoring: Passive acoustic monitoring is a technique used to listen to and record sounds in the underwater environment without emitting any signals or noises. This method allows researchers to track marine life and assess their habitats by capturing sounds produced by various aquatic organisms, such as vocalizations from fish, whales, and other marine species. It is a non-invasive approach that provides valuable insights into marine ecosystems and the behaviors of their inhabitants.
Plankton nets: Plankton nets are specialized mesh nets designed to collect plankton from aquatic environments, including oceans, lakes, and rivers. These nets help researchers gather samples of both phytoplankton and zooplankton, which are essential for understanding marine ecosystems, food webs, and the health of aquatic habitats.
Real-time monitoring: Real-time monitoring is the continuous observation and assessment of data as it is collected, allowing for immediate analysis and response. This process is crucial in tracking marine life and assessing habitats, as it enables researchers to gather insights instantly and make timely decisions regarding conservation and management efforts.
Remotely Operated Vehicles (ROVs): Remotely Operated Vehicles (ROVs) are unmanned robotic devices controlled from a distance, typically used for underwater exploration and tasks. They are essential for various applications including marine research, inspection, and maintenance in challenging underwater environments, where human divers may face risks or limitations.
Seagrass beds: Seagrass beds are underwater ecosystems formed by the growth of seagrasses, flowering plants that thrive in shallow coastal waters. These ecosystems provide critical habitats for a wide variety of marine life, including fish, invertebrates, and sea turtles, while also playing a significant role in nutrient cycling and coastal protection.
Seamounts: Seamounts are underwater mountains formed by volcanic activity, typically rising at least 1,000 meters from the ocean floor. These geological features play a crucial role in marine ecosystems as they provide habitats for diverse marine life and are often hotspots for biological productivity due to their unique topography and nutrient availability.
Sediment Sampling: Sediment sampling refers to the process of collecting sediment from the seafloor to analyze its composition, structure, and the biological communities it supports. This technique is crucial for understanding marine ecosystems, as sediments play a vital role in nutrient cycling, habitat formation, and providing insights into historical environmental changes.
Sensor integration: Sensor integration refers to the process of combining data from multiple sensors to create a comprehensive and accurate representation of the environment or system being monitored. This technique enhances the capability of underwater robotics by allowing them to gather richer information from various sources, such as sonar, cameras, and environmental sensors. By synthesizing these data streams, underwater robots can achieve more precise navigation, mapping, and environmental assessments.
Social Network Analysis: Social network analysis is a methodological approach used to study the relationships and structures within networks, focusing on how entities interact and influence one another. This approach is particularly useful in understanding patterns of connectivity among marine species, which can help in tracking their movements and assessing habitat utilization. By mapping these interactions, researchers can gain insights into behavioral ecology and the impact of environmental changes on marine life.
State-space models: State-space models are mathematical representations of dynamic systems that describe the system's behavior in terms of state variables and their interactions over time. These models allow for the analysis and prediction of system behavior by capturing the relationships between inputs, outputs, and internal states, making them particularly useful in fields like control theory and engineering. In marine life tracking and habitat assessment, state-space models can effectively track the movement patterns of aquatic organisms and evaluate their habitats under various environmental conditions.
Sustainable fishing practices: Sustainable fishing practices refer to methods of fishing that maintain fish populations and the overall health of marine ecosystems for the long-term. These practices aim to minimize environmental impacts, protect habitats, and ensure that fish stocks remain viable for future generations. By promoting responsible harvesting techniques and implementing regulations, sustainable fishing helps balance economic needs with ecological integrity.
Temporal analysis: Temporal analysis refers to the method of examining data over time to identify patterns, trends, and changes in behavior or environment. This technique is essential in understanding how marine life interacts with their habitat and can help in assessing shifts in ecosystems due to environmental factors or human impact.
Time series analysis: Time series analysis is a statistical technique used to analyze time-ordered data points to identify patterns, trends, and seasonal variations over time. This method is essential for understanding how marine life populations change over periods, allowing for predictions and assessments of ecological health.
Video monitoring: Video monitoring refers to the use of video technology to observe and record activities in a specific area. This technique is crucial for studying marine life and assessing habitats, as it allows researchers to gather real-time visual data without disturbing the ecosystem. By using various types of cameras, including underwater and remote systems, researchers can document behaviors, interactions, and environmental conditions that are essential for understanding marine biodiversity and habitat health.
Water Samplers: Water samplers are devices used to collect water samples from various aquatic environments for analysis and monitoring. They play a crucial role in studying water quality, marine life, and the overall health of aquatic ecosystems by allowing researchers to obtain data on chemical, physical, and biological properties of water.
Woods Hole Oceanographic Institution: The Woods Hole Oceanographic Institution (WHOI) is a prominent research organization dedicated to the study of ocean science and engineering. Founded in 1930, it has become a leading center for oceanographic research, contributing significantly to the understanding of underwater environments and the development of advanced underwater technologies, including robotics. WHOI plays a vital role in various underwater applications, such as cave exploration, marine life tracking, and habitat assessment.
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