4.1 Studying Cells

3 min readjune 14, 2024

Cells are the fundamental building blocks of life, from single-celled organisms to complex multicellular beings. They perform essential functions like metabolism, energy production, and reproduction. Understanding cells is crucial for grasping how life works at its most basic level.

Microscopy has revolutionized our ability to study cells. let us observe living cells, while provide incredibly detailed images of cell structures. These tools have been instrumental in developing our understanding of and structure.

Introduction to Cells

Cells as basic life units

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  • Smallest functional units of life compose all living organisms from bacteria to humans
  • Carry out essential life processes like metabolism (chemical reactions), energy production ( synthesis), waste removal (excretion), growth, and reproduction
  • Contain genetic material (DNA) passed on during cell division ( or meiosis) to create identical daughter cells
  • Multicellular organisms have specialized cells that perform specific functions (neurons transmit signals, muscle cells contract) and work together to maintain the organism's overall health

Light vs electron microscopy

  • Light microscopy uses visible light and lenses to magnify specimens 40x to 1000x
    • Allows observation of living cells and components like , , and
    • Limited resolution due to visible light wavelength (200 nm)
    • Specimens can be stained () to enhance contrast and highlight structures
  • Electron microscopy uses electron beam to create high magnification, high resolution images
    • (TEM) up to 1,000,000x magnification to visualize cell ultrastructure (ribosomes, )
    • (SEM) up to 500,000x magnification for 3D surface topography
    • Requires special sample preparation (fixation, dehydration, metal coating) preventing observation of live specimens due to vacuum environment

Key principles of cell theory

  • Fundamental concept describing properties of cells developed collaboratively:
    1. All living organisms composed of one or more cells (unicellular bacteria to multicellular plants and animals)
    2. Cell is basic unit of structure and function in all living organisms
    3. All cells arise from pre-existing cells through cell division ( in prokaryotes, mitosis in eukaryotes)
  • (1838) concluded all plant tissues composed of cells
  • (1839) realized all animal tissues also composed of cells
  • (1855) proposed cells arise from pre-existing cells - "Omnis cellula e cellula"
  • Provides unifying framework emphasizing fundamental similarities between all life forms at cellular level
  • Serves as foundation for biological concepts like genetics (DNA), evolution (common ancestry), and physiology (organ system functions)

Cell structures and their functions

  • : Selectively permeable barrier that controls the movement of substances in and out of the cell
  • : Gel-like substance within the cell where are suspended and cellular processes occur
  • Nucleus: Control center of the cell, containing genetic material (DNA) and directing cellular activities
  • Ribosomes: Sites of protein synthesis, found free in the cytoplasm or attached to the
  • Chloroplasts: Organelles in plant cells responsible for photosynthesis, converting light energy into chemical energy
  • Vacuoles: Membrane-bound sacs in plant cells that store water, nutrients, and waste products
  • : Rigid structure in plant cells that provides support and protection (not present in animal cells)

Key Terms to Review (45)

Anaerobic cellular respiration: Anaerobic cellular respiration is a form of respiration that occurs without oxygen. It involves the breakdown of glucose to produce energy and typically results in byproducts like lactic acid or ethanol.
ATP: Adenosine triphosphate (ATP) is a high-energy molecule that serves as the primary energy currency of the cell, driving various biological processes. It plays a critical role in energy transfer within cells, linking energy-releasing reactions to energy-requiring processes, making it essential for cellular functions and metabolism.
Binary fission: Binary fission is a form of asexual reproduction in which a single organism divides into two identical daughter cells. This process is primarily observed in prokaryotic cells and is crucial for their growth and reproduction, enabling rapid population increases. It also plays a significant role in the study of cell division, contributing to our understanding of how organisms reproduce and evolve.
Cell differentiation: Cell differentiation is the process by which a less specialized cell becomes a more specialized cell type, often during development. This biological process is crucial for the formation of various tissues and organs, allowing cells to perform unique functions tailored to specific roles in an organism. Differentiation is influenced by genetic regulation, environmental factors, and cell signaling, ensuring that cells acquire distinct identities.
Cell membrane: The cell membrane, also known as the plasma membrane, is a selectively permeable barrier that surrounds and protects the cell, regulating the movement of substances in and out. This structure plays a critical role in maintaining homeostasis within the cell, as well as facilitating communication and signaling between cells, which is essential for overall organism function.
Cell Theory: Cell theory is a fundamental concept in biology that states that all living organisms are composed of one or more cells, the cell is the basic unit of life, and all cells arise from pre-existing cells. This theory underpins much of our understanding of biological processes and the organization of living things, emphasizing the importance of cells as the building blocks of life.
Cell wall: A cell wall is a rigid layer that surrounds the cells of plants, fungi, bacteria, and archaea. It provides structural support and protection while also determining the shape of the cell.
Cell Wall: The cell wall is a rigid outer layer that surrounds the plasma membrane of plant cells, fungi, and some prokaryotic organisms. It provides structural support, protection, and helps maintain cell shape, acting as a barrier against external stresses and pathogens while also regulating the passage of substances in and out of the cell.
Cellular respiration: Cellular respiration is a metabolic process in which cells convert glucose and oxygen into energy, carbon dioxide, and water. This process is vital for producing ATP, the energy currency of the cell, and it connects various biological themes, including energy transfer and cellular function.
Chloroplast: Chloroplasts are organelles found in plant cells and algae responsible for photosynthesis. They convert light energy into chemical energy stored in glucose molecules.
Chloroplast: Chloroplasts are membrane-bound organelles found in plant cells and some algae that are responsible for photosynthesis, the process of converting light energy into chemical energy. They contain chlorophyll, the green pigment that captures sunlight, allowing the plant to produce glucose and oxygen from carbon dioxide and water.
Cytoplasm: Cytoplasm is the gel-like substance within the cell membrane that contains all organelles and cell parts. It plays a crucial role in supporting and suspending cellular components, facilitating cellular processes.
Cytoplasm: Cytoplasm is the gel-like substance found within a cell, excluding the nucleus, that houses various organelles and is vital for cellular processes. It is composed mainly of water, salts, and organic molecules, playing a key role in maintaining the shape of the cell and facilitating the movement of materials around it. The cytoplasm serves as a medium for metabolic reactions and helps in the transportation of nutrients and waste products.
Cytoskeleton: The cytoskeleton is a network of protein filaments and tubules that provides structure, shape, and movement to the cell. It plays crucial roles in intracellular transport and cellular division.
Cytoskeleton: The cytoskeleton is a dynamic network of protein filaments and tubules that provides structural support, shape, and organization to cells. It plays a crucial role in various cellular functions, including movement, division, and maintaining the integrity of the cell, making it essential for both prokaryotic and eukaryotic cells.
Electron microscope: An electron microscope is a type of microscope that uses a beam of electrons to create an image of the specimen, achieving much higher resolution than light microscopes. This advanced imaging technology allows scientists to study the ultrastructure of cells and their components in greater detail, revealing features that are not visible with traditional optical microscopy.
Electron microscopes: Electron microscopes use beams of electrons to achieve much higher magnifications and resolutions than light microscopes. They are essential for visualizing the detailed structure of cells and their organelles.
Endocytosis: Endocytosis is a cellular process where the cell membrane engulfs external substances, forming vesicles to internalize them. This mechanism is essential for nutrient uptake, receptor signaling, and pathogen defense.
Endocytosis: Endocytosis is a cellular process in which substances are brought into the cell by engulfing them in a portion of the cell membrane that then pinches off to form a vesicle. This process is crucial for transporting large molecules, nutrients, and other materials across the cell membrane, allowing cells to take in what they need to function properly.
Endoplasmic reticulum: The endoplasmic reticulum (ER) is a network of membranous tubules and sacs within eukaryotic cells, playing a crucial role in the synthesis, folding, modification, and transport of proteins and lipids. It is divided into two types: rough ER, which has ribosomes on its surface and is involved in protein synthesis, and smooth ER, which is responsible for lipid synthesis and detoxification processes. This organelle connects deeply with various biological themes like cellular structure and function, cellular interactions, and the complex systems that govern life.
Endoplasmic reticulum (ER): The endoplasmic reticulum (ER) is a network of membranous tubules and sacs within the cytoplasm of eukaryotic cells. It plays a key role in the synthesis, folding, modification, and transport of proteins and lipids.
Eukaryotic: Eukaryotic refers to a type of cell that has a true nucleus enclosed within membranes, along with other membrane-bound organelles. These cells are more complex than prokaryotic cells and can be unicellular or multicellular, forming the basis for various life forms, including plants, animals, fungi, and protists.
Golgi apparatus: The Golgi apparatus is an organelle found in eukaryotic cells that functions as a central hub for modifying, sorting, and packaging proteins and lipids for secretion or delivery to other organelles. It plays a crucial role in the endomembrane system, interacting with the rough endoplasmic reticulum and vesicles to facilitate protein transport and processing.
Hematoxylin and Eosin: Hematoxylin and eosin (H&E) is a widely used staining technique in histology that helps to visualize the structures and components of cells and tissues under a microscope. Hematoxylin stains cell nuclei blue, highlighting DNA and RNA, while eosin stains the cytoplasm and extracellular matrix pink, providing contrast to better differentiate various tissue types. This method is essential for studying cellular morphology and identifying pathological changes in tissue samples.
Light microscope: A light microscope is an optical instrument that uses visible light and a system of lenses to magnify small objects, allowing for the visualization of cells and their structures. This type of microscope is essential for studying biological specimens, as it enables scientists to observe cellular details that are otherwise invisible to the naked eye, providing insights into the fundamental building blocks of life.
Light microscopes: Light microscopes are optical instruments that use visible light and lenses to magnify small objects. They are commonly used to observe cells and other microscopic structures in biology.
Matthias Schleiden: Matthias Schleiden was a German botanist who played a key role in the development of cell theory during the 19th century. He is best known for his assertion that all plant tissues are composed of cells, which helped to lay the groundwork for the understanding of cellular biology. His work emphasized the importance of cells as the fundamental unit of life, connecting the study of cells to broader biological concepts.
Membrane potential: Membrane potential refers to the difference in electric charge across a cell's plasma membrane, primarily caused by the distribution of ions such as sodium, potassium, and chloride. This electric gradient is crucial for various cellular processes, including signal transmission in neurons and muscle contractions. It creates a resting state that cells maintain, allowing them to respond to stimuli effectively.
Microscope: A microscope is an optical instrument used to magnify small objects, making them visible to the human eye. It is essential for studying cells and their structures in detail.
Mitochondria: Mitochondria are membrane-bound organelles found in eukaryotic cells, known as the powerhouses of the cell because they generate adenosine triphosphate (ATP) through oxidative phosphorylation. They play a critical role in energy metabolism, cell signaling, and regulating apoptosis, thus connecting various biological processes and energy flows within living organisms.
Mitosis: Mitosis is the process of cell division that results in two genetically identical daughter cells, each containing the same number of chromosomes as the original cell. This process is essential for growth, development, and tissue repair in multicellular organisms, linking it to various biological concepts including cellular organization and reproduction.
Nucleus: The nucleus is a membrane-bound organelle found in eukaryotic cells that contains the cell's genetic material, organized as DNA molecules along with proteins to form chromosomes. It serves as the control center for cell activities, regulating gene expression and mediating the replication of DNA during cell division.
Organelles: Organelles are specialized structures within a cell that perform distinct processes. They are essential for various cellular functions in eukaryotic cells.
Organelles: Organelles are specialized structures within a cell that perform distinct processes necessary for the cell's survival and proper function. These components work together to maintain cellular homeostasis and facilitate various biochemical reactions, making them essential for both prokaryotic and eukaryotic life forms.
Phospholipid: A phospholipid is a type of lipid molecule that forms the fundamental structure of cell membranes. It consists of a hydrophilic 'head' that is attracted to water and two hydrophobic 'tails' that repel water, creating a bilayer arrangement essential for cellular function. This unique structure allows phospholipids to create semi-permeable membranes that regulate what enters and exits the cell, which is crucial for maintaining cellular homeostasis.
Plasma membrane: The plasma membrane is a biological barrier that surrounds and protects the contents of a cell, regulating the movement of substances in and out of the cell. It is essential for maintaining homeostasis, communication, and signaling between cells, and plays a critical role in various cellular processes such as transport and cellular interactions.
Prokaryotic: Prokaryotic refers to a type of cell that is characterized by the absence of a true nucleus and membrane-bound organelles. These cells are generally smaller and simpler than eukaryotic cells, and they include organisms such as bacteria and archaea. Prokaryotic cells reproduce asexually through binary fission and have a significant role in various ecological processes, including decomposition and nutrient cycling.
Ribosome: A ribosome is a complex molecular machine found within all living cells that serves as the site of protein synthesis. It reads the genetic code carried by messenger RNA (mRNA) and translates it into polypeptide chains, which then fold into functional proteins. Ribosomes can be found freely floating in the cytoplasm or attached to the endoplasmic reticulum, playing a crucial role in cellular function and gene expression.
Robert Hooke: Robert Hooke was a 17th-century English scientist known for his pioneering work in microscopy and for coining the term 'cell' in his book, 'Micrographia.' His observations of thin slices of cork revealed tiny, hollow structures that he described as cells, which laid the groundwork for the development of cell theory and fundamentally changed our understanding of biology.
Rudolf Virchow: Rudolf Virchow was a pioneering German physician, pathologist, and anthropologist, known as the 'father of modern pathology' for his contributions to the understanding of cellular processes in disease. He is best recognized for his assertion that all cells arise from pre-existing cells, fundamentally shaping the study of cells and their roles in health and disease.
Scanning Electron Microscopy: Scanning Electron Microscopy (SEM) is a powerful imaging technique used to view the surface morphology and composition of specimens at a high resolution. This method employs focused beams of electrons that scan the specimen's surface, generating detailed three-dimensional images that reveal fine structural details not visible with traditional light microscopy.
Theodor Schwann: Theodor Schwann was a German physiologist best known for his role in developing the cell theory in the 19th century. He proposed that all living organisms are composed of cells, emphasizing the importance of cells as the fundamental unit of life. His contributions were pivotal in advancing our understanding of cellular biology and the organization of living organisms.
Transmission Electron Microscopy: Transmission Electron Microscopy (TEM) is an advanced imaging technique that uses a beam of electrons transmitted through a specimen to create highly detailed images at the nanometer scale. This method provides insights into the internal structure of cells and materials, revealing features that are not visible with light microscopy due to limitations in resolution.
Unified cell theory: Unified Cell Theory states that all living organisms are composed of cells, cells are the basic unit of life, and all cells arise from pre-existing cells. This theory forms the foundation for understanding cell structure and function.
Vacuole: A vacuole is a membrane-bound organelle found in the cells of plants, fungi, and some protists, primarily used for storage and maintaining cellular homeostasis. Vacuoles can store a variety of substances including nutrients, waste products, and pigments, and play a critical role in regulating turgor pressure within the cell. They are essential for cellular processes such as transport and detoxification.
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